Package org.biojavax.bio.seq

Interface PositionResolver

All Known Implementing Classes:
PositionResolver.AverageResolver, PositionResolver.MaximalResolver, PositionResolver.MinimalResolver
public interface PositionResolver
Resolves a position that is fuzzy or covers a range of bases by converting it to a single base.
Since:
1.5
Author:
Richard Holland

  • Nested Class Summary

    Nested Classes
    Modifier and Type
    Interface
    Description
    static class 
    PositionResolver.AverageResolver
    The minimal resolver returns the base which provides the average range, halfway between maximal and minimal.
    static class 
    PositionResolver.MaximalResolver
    The maximal resolver returns the base which provides the largest possible range.
    static class 
    PositionResolver.MinimalResolver
    The minimal resolver returns the base which provides the smallest possible range.

  • Method Summary

    Modifier and Type
    Method
    Description
    int
    getMax(Position end)
    Resolves the maximum possible base for this position.
    int
    getMin(Position start)
    Resolves the minimum possible base for this position.

  • Method Details

    • getMin

      int getMin(Position start)
      Resolves the minimum possible base for this position.
      Parameters:
      start - the position to resolve
      Returns:
      the minimum possible base this resolver can return.

    • getMax

      int getMax(Position end)
      Resolves the maximum possible base for this position.
      Parameters:
      end - the position to resolve
      Returns:
      the maximum possible base this resolver can return.