Uses of Interface
org.biojavax.bio.seq.RichFeature
Packages that use RichFeature
Package
Description
Rich implementations of Sequences, Locations and Features.
Classes to support the I/O of RichSequence and
Bioentry objects.
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Uses of RichFeature in org.biojavax.bio.seq
Classes in org.biojavax.bio.seq that implement RichFeatureMethods in org.biojavax.bio.seq that return RichFeatureModifier and TypeMethodDescriptionstatic RichFeatureTakes a normal Feature and attempts to convert it into a RichFeature.EmptyRichLocation.getFeature()Retrieves the feature this location is associated with.RichLocation.getFeature()Retrieves the feature this location is associated with.SimpleRichLocation.getFeature()Retrieves the feature this location is associated with.RichFeatureRelationship.getObject()Returns the object of this relationship (ie. the feature which this relationship starts from).SimpleRichFeatureRelationship.getObject()Returns the object of this relationship (ie. the feature which this relationship starts from).RichFeatureRelationship.getSubject()Gets the feature that this relationship refers to.SimpleRichFeatureRelationship.getSubject()Gets the feature that this relationship refers to.static RichFeatureRichFeature.Tools.makeEmptyFeature()A way to make a dummy featureMethods in org.biojavax.bio.seq with parameters of type RichFeatureModifier and TypeMethodDescriptionvoidCompoundRichLocation.setFeature(RichFeature feature) Sets the feature this location is associated with.voidEmptyRichLocation.setFeature(RichFeature feature) Sets the feature this location is associated with.voidRichLocation.setFeature(RichFeature feature) Sets the feature this location is associated with.voidSimpleRichLocation.setFeature(RichFeature feature) Sets the feature this location is associated with.Constructors in org.biojavax.bio.seq with parameters of type RichFeatureModifierConstructorDescriptionSimpleRichFeatureRelationship(RichFeature object, RichFeature subject, ComparableTerm term, int rank) Creates a new instance of SimpleRichFeatureRelationship. -
Uses of RichFeature in org.biojavax.bio.seq.io
Fields in org.biojavax.bio.seq.io declared as RichFeatureModifier and TypeFieldDescriptionprotected RichFeatureRichSeqIOAdapter.emptyFeatureThis is a dummy feature.Methods in org.biojavax.bio.seq.io that return RichFeatureModifier and TypeMethodDescriptionDebuggingRichSeqIOListener.getCurrentFeature()RichSeqIOAdapter.getCurrentFeature()RichSeqIOListener.getCurrentFeature()Gets the feature currently being created.SimpleRichSequenceBuilder.getCurrentFeature()Gets the feature currently being created.