Uses of Class
org.biojavax.bio.seq.RichLocation.Strand
Packages that use RichLocation.Strand
Package
Description
Interface between biojava and biosql databases
Rich implementations of Sequences, Locations and Features.
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Uses of RichLocation.Strand in org.biojavax.bio.db.biosql
Methods in org.biojavax.bio.db.biosql that return RichLocation.StrandConstructors in org.biojavax.bio.db.biosql with parameters of type RichLocation.StrandModifierConstructorDescriptionCreates a filter that returns everything on strand str. -
Uses of RichLocation.Strand in org.biojavax.bio.seq
Fields in org.biojavax.bio.seq declared as RichLocation.StrandModifier and TypeFieldDescriptionstatic final RichLocation.StrandRichLocation.Strand.NEGATIVE_STRANDThe negative strand is represented by the symbol '-' and has the number -1.static final RichLocation.StrandRichLocation.Strand.POSITIVE_STRANDThe positive strand is represented by the symbol '+' and has the number 1.static final RichLocation.StrandRichLocation.Strand.UNKNOWN_STRANDThe unknown strand is represented by the symbol '?'Methods in org.biojavax.bio.seq that return RichLocation.StrandModifier and TypeMethodDescriptionstatic RichLocation.StrandReturns the strand object that matches the symbol given.static RichLocation.StrandRichLocation.Strand.forValue(int value) Returns the strand object that matches the number given.EmptyRichLocation.getStrand()Retrieves the strand associated with this location.MultiSourceCompoundRichLocation.getStrand()Retrieves the strand associated with this location.RichLocation.getStrand()Retrieves the strand associated with this location.SimpleRichLocation.getStrand()Retrieves the strand associated with this location.Methods in org.biojavax.bio.seq with parameters of type RichLocation.StrandModifier and TypeMethodDescriptionprotected voidSimpleRichLocation.setStrand(RichLocation.Strand strand) Constructors in org.biojavax.bio.seq with parameters of type RichLocation.StrandModifierConstructorDescriptionSimpleRichLocation(Position pos, int rank, RichLocation.Strand strand) Creates a new instance of SimpleRichSequenceLocation that points to a single position.SimpleRichLocation(Position pos, int rank, RichLocation.Strand strand, CrossRef crossRef) Creates a new instance of SimpleRichSequenceLocation that points to a single position on another sequence.SimpleRichLocation(Position min, Position max, int rank, RichLocation.Strand strand) Creates a new instance of SimpleRichSequenceLocation that points to a range position.SimpleRichLocation(Position min, Position max, int rank, RichLocation.Strand strand, CrossRef crossRef) Creates a new instance of SimpleRichSequenceLocation that points to a range position on another sequence.