Package org.biojavax.bio.seq.io
Class FastaHeader
java.lang.Object
org.biojavax.bio.seq.io.FastaHeader
This class is used by
FastaFormat to determine which fields are in the
fasta header. By default they all are except for the sequence name. This is for
compliance with fasta files that come from Genbank where the name is derived
from the accession number so need not be repeated.
The class can be used to customise
what appears. Eg if you only want the accession set everything else false.
Note that if fields in the RichSequence being parsed by the
FastaFormat object then they may not be in the header even if
they are specified in this class.- Since:
- 1.6
- Author:
- Mark Schreiber
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionbooleanbooleanbooleanbooleanbooleanbooleanvoidsetShowAccession(boolean showAccession) voidsetShowDescription(boolean showDescription) voidsetShowIdentifier(boolean showIdentifier) voidsetShowName(boolean showName) voidsetShowNamespace(boolean showNamespace) voidsetShowVersion(boolean showVersion) Determines if the version number of a sequence should be displayed.
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Constructor Details
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FastaHeader
public FastaHeader()
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Method Details
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isShowIdentifier
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setShowIdentifier
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isShowNamespace
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setShowNamespace
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isShowAccession
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setShowAccession
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isShowVersion
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setShowVersion
Determines if the version number of a sequence should be displayed. If there is no accession this may not make much sense.- Parameters:
showVersion-
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isShowName
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setShowName
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isShowDescription
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setShowDescription
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