Package org.biojavax.bio.seq.io

Class RichSequenceFormat.HeaderlessFormat

java.lang.Object
org.biojavax.bio.seq.io.RichSequenceFormat.BasicFormat
org.biojavax.bio.seq.io.RichSequenceFormat.HeaderlessFormat
All Implemented Interfaces:
SequenceFormat, RichSequenceFormat
Direct Known Subclasses:
EMBLFormat, FastaFormat, GenbankFormat, UniProtFormat
Enclosing interface:
RichSequenceFormat
public abstract static class RichSequenceFormat.HeaderlessFormat extends RichSequenceFormat.BasicFormat
Provides the basic implementation required for simple header/footer-less files such as Genbank.

  • Constructor Details

  • Method Details

    • beginWriting

      public void beginWriting() throws IOException
      Informs the writer that we want to start writing. This will do any initialisation required, such as writing the opening tags of an XML file that groups sequences together.
      Throws:
      IOException - if writing fails.

    • finishWriting

      public void finishWriting() throws IOException
      Informs the writer that are done writing. This will do any finalisation required, such as writing the closing tags of an XML file that groups sequences together.
      Throws:
      IOException - if writing fails.