Uses of Interface
org.biojavax.bio.seq.io.RichSeqIOListener
Packages that use RichSeqIOListener
Package
Description
Classes to support the I/O of RichSequence and
Bioentry objects.
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Uses of RichSeqIOListener in org.biojavax.bio.seq.io
Subinterfaces of RichSeqIOListener in org.biojavax.bio.seq.ioModifier and TypeInterfaceDescriptioninterfaceAn interface for objects that can build RichSequences.Classes in org.biojavax.bio.seq.io that implement RichSeqIOListenerModifier and TypeClassDescriptionclassThis is purely for debugging purposes.classThis class implements all methods of RichSeqIOListener and takes no action.classConstructs BioEntry objects by listening to events.Methods in org.biojavax.bio.seq.io with parameters of type RichSeqIOListenerModifier and TypeMethodDescriptionvoidFastaFormat.processHeader(String line, RichSeqIOListener rsiol, Namespace ns) Parse the Header information from the Fasta Description linebooleanEMBLFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.booleanEMBLxmlFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.booleanFastaFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rsiol, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.booleanGenbankFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.booleanINSDseqFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.booleanRichSequenceFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener listener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.booleanUniProtFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.booleanUniProtXMLFormat.readRichSequence(BufferedReader reader, SymbolTokenization symParser, RichSeqIOListener rlistener, Namespace ns) Reads a sequence from the given buffered reader using the given tokenizer to parse sequence symbols.