Uses of Interface
org.biojavax.Note

Packages that use Note
Package
Description
org.biojavax
The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio
Classes to represent biological entities and their relationships.
org.biojavax.bio.db.biosql
Interface between biojava and biosql databases

  • Uses of Note in org.biojavax

    Classes in org.biojavax that implement Note
    Modifier and Type
    Class
    Description
    class 
    SimpleNote
    Simple implementation of Note.
    Methods in org.biojavax that return Note
    Modifier and Type
    Method
    Description
    Note
    EmptyRichAnnotation.getNote(Note note)
    Uses the term and rank to lookup a note in this annotation.
    Note
    RichAnnotation.getNote(Note note)
    Uses the term and rank to lookup a note in this annotation.
    Note
    SimpleRichAnnotation.getNote(Note note)
    Uses the term and rank to lookup a note in this annotation.
    Note[]
    EmptyRichAnnotation.getProperties(Object key)
    Find all the Notes with any rank that match the key.
    Note[]
    RichAnnotation.getProperties(Object key)
    Find all the Notes with any rank that match the key.
    Note[]
    SimpleRichAnnotation.getProperties(Object key)
    Deprecated. 
    Methods in org.biojavax that return types with arguments of type Note
    Modifier and Type
    Method
    Description
    Set<Note>
    RichAnnotatable.getNoteSet()
    Returns the set of notes associated with this object.
    Set<Note>
    RichAnnotation.getNoteSet()
    Returns an immutable set of all notes in this annotation.
    Set<Note>
    SimpleRichAnnotation.getNoteSet()
    Returns an immutable set of all notes in this annotation.
    Methods in org.biojavax with parameters of type Note
    Modifier and Type
    Method
    Description
    void
    EmptyRichAnnotation.addNote(Note note)
    Adds a note to this annotation.
    void
    RichAnnotation.addNote(Note note)
    Adds a note to this annotation.
    void
    SimpleRichAnnotation.addNote(Note note)
    Adds a note to this annotation.
    boolean
    EmptyRichAnnotation.contains(Note note)
    Returns true if the given note exists in this annotation.
    boolean
    RichAnnotation.contains(Note note)
    Returns true if the given note exists in this annotation.
    boolean
    SimpleRichAnnotation.contains(Note note)
    Returns true if the given note exists in this annotation.
    Note
    EmptyRichAnnotation.getNote(Note note)
    Uses the term and rank to lookup a note in this annotation.
    Note
    RichAnnotation.getNote(Note note)
    Uses the term and rank to lookup a note in this annotation.
    Note
    SimpleRichAnnotation.getNote(Note note)
    Uses the term and rank to lookup a note in this annotation.
    void
    EmptyRichAnnotation.removeNote(Note note)
    Removes a note from this annotation.
    void
    RichAnnotation.removeNote(Note note)
    Removes a note from this annotation.
    void
    SimpleRichAnnotation.removeNote(Note note)
    Removes a note from this annotation.
    Method parameters in org.biojavax with type arguments of type Note
    Modifier and Type
    Method
    Description
    void
    RichAnnotatable.setNoteSet(Set<Note> notes)
    Clears the notes associated with this object and replaces them with the contents of this set.
    void
    RichAnnotation.setNoteSet(Set<Note> notes)
    Clears the notes from this annotation and replaces them with those from the given set.
    void
    SimpleRichAnnotation.setNoteSet(Set<Note> notes)
    Clears the notes from this annotation and replaces them with those from the given set.

  • Uses of Note in org.biojavax.bio

    Methods in org.biojavax.bio that return types with arguments of type Note
    Modifier and Type
    Method
    Description
    Set<Note>
    SimpleBioEntry.getNoteSet()
    Returns the set of notes associated with this object.
    Method parameters in org.biojavax.bio with type arguments of type Note
    Modifier and Type
    Method
    Description
    void
    SimpleBioEntry.setNoteSet(Set<Note> notes)
    Clears the notes associated with this object and replaces them with the contents of this set.

  • Uses of Note in org.biojavax.bio.db.biosql

    Methods in org.biojavax.bio.db.biosql that return Note
    Modifier and Type
    Method
    Description
    Note
    BioSQLFeatureFilter.ByNote.getNote()
     
    Constructors in org.biojavax.bio.db.biosql with parameters of type Note
    Modifier
    Constructor
    Description
     
    ByNote(Note note)