Uses of Interface
org.biojavax.ga.Organism
Packages that use Organism
Package
Description
Classes to provide a genetic algorithm framework
GA functions
Default implementations and abstract classes.
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Uses of Organism in org.biojavax.ga
Methods in org.biojavax.ga that return OrganismModifier and TypeMethodDescriptionPopulation.getOrganismByName(String name) Gets the specified organismCreates a replica of thisOrganismwith a new name.Methods in org.biojavax.ga with parameters of type OrganismModifier and TypeMethodDescriptionvoidPopulation.addOrganism(Organism org) Adds an Organism to the PopulationvoidPopulation.addOrganisms(Organism[] orgs) Adds several organisms to the populationvoidPopulation.removeOrganism(Organism org) Kills off the organismvoidPopulation.removeOrganisms(Organism[] orgs) Removes all theOrganismsinorgs -
Uses of Organism in org.biojavax.ga.functions
Methods in org.biojavax.ga.functions with parameters of type OrganismModifier and TypeMethodDescriptiondouble[]FitnessFunction.fitness(Organism org, Population pop, GeneticAlgorithm genAlg) Calculates the fitness oforg. -
Uses of Organism in org.biojavax.ga.impl
Classes in org.biojavax.ga.impl that implement OrganismModifier and TypeClassDescriptionclassAbstract implementation of Organism.classA Simple Haploid Organism implementationMethods in org.biojavax.ga.impl that return OrganismMethods in org.biojavax.ga.impl with parameters of type OrganismModifier and TypeMethodDescriptionfinal voidAbstractPopulation.addOrganism(Organism org) protected abstract voidAbstractPopulation.addOrganismImpl(Organism org) protected voidSimplePopulation.addOrganismImpl(Organism orgToAdd) final voidAbstractPopulation.addOrganisms(Organism[] orgs) final voidAbstractPopulation.removeOrganism(Organism org) protected abstract voidAbstractPopulation.removeOrganismImpl(Organism org) protected voidSimplePopulation.removeOrganismImpl(Organism orgToRemove) final voidAbstractPopulation.removeOrganisms(Organism[] orgs) Constructors in org.biojavax.ga.impl with parameters of type OrganismModifierConstructorDescriptionprotectedAbstractOrganism(Organism org, String name) SimpleOrganism(Organism org, String name)