SimpleOrganism (biojava-legacy 1.9.7 API)

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojavax.ga.impl.AbstractOrganism

org.biojavax.ga.impl.SimpleOrganism

All Implemented Interfaces:: Changeable, Organism

public class SimpleOrganism extends AbstractOrganism

A Simple Haploid Organism implementation

Since:: 1.5
Version:: 1.0
Author:: Mark Schreiber

Field Summary

Fields inherited from class org.biojavax.ga.impl.AbstractOrganism
chromosomes

Fields inherited from interface org.biojavax.ga.Organism
CHROMOSOMES, NAME
Constructor Summary

Constructors

Constructor

Description

SimpleOrganism()

SimpleOrganism(String name)

SimpleOrganism(Organism org, String name)
Method Summary

Modifier and Type

Method

Description

boolean

isHaploid()

Simple Organisms are Halpoid

Organism

replicate(String name)

Creates a replica of this Organism with a new name.

protected void

setChromImpl(SymbolList[] chromosomes)

Methods inherited from class org.biojavax.ga.impl.AbstractOrganism
getChromosomes, getFitness, getName, setChromosomes, setFitness, setName

Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Details
- SimpleOrganism
  
  public SimpleOrganism()
- SimpleOrganism
  
  public SimpleOrganism(String name)
- SimpleOrganism
  
  public SimpleOrganism(Organism org, String name)
Method Details
- setChromImpl
  
  protected void setChromImpl(SymbolList[] chromosomes)
  
  Specified by:
  
  setChromImpl in class AbstractOrganism
- isHaploid
  
  public boolean isHaploid()
  
  Simple Organisms are Halpoid
  
  Specified by:
  
  isHaploid in interface Organism
  
  Specified by:
  
  isHaploid in class AbstractOrganism
  
  Returns:
  
  true
- replicate
  
  public Organism replicate(String name)
  
  Description copied from interface: Organism
  
  Creates a replica of this Organism with a new name.
  
  Parameters:
  
  name - the new name for the sequence.
  
  Returns:
  
  the replicated organism.