org.biojava3.core.sequence.features

Class QuantityFeature<S extends AbstractSequence<C>,C extends Compound>

java.lang.Object

org.biojava3.core.sequence.features.AbstractFeature<S,C>

org.biojava3.core.sequence.features.QuantityFeature<S,C>

All Implemented Interfaces:

FeatureInterface<S,C>

public class QuantityFeature<S extends AbstractSequence<C>,C extends Compound>
extends AbstractFeature<S,C>

It is common to have a numerical value or values associated with a feature. This can then be used in heat maps or other visual indicators when viewing a sequence. Multiple quantities could represent a time corse study and display a color gradient

Author:

Scooter Willis

Field Summary

Fields inherited from class org.biojava3.core.sequence.features.AbstractFeature

LENGTH, LOCATION_LENGTH

Constructor Summary

Constructors

Constructor and Description
QuantityFeature(java.lang.String type, java.lang.String source)

Method Summary

Methods

Modifier and Type	Method and Description
void	addQuantity(java.lang.Number value)
java.util.List<java.lang.Number>	getQuantities()
void	setQuantities(java.util.List<java.lang.Number> quantities)

Methods inherited from class org.biojava3.core.sequence.features.AbstractFeature

getChildrenFeatures, getDescription, getLocations, getParentFeature, getShortDescription, getSource, getType, getUserObject, setChildrenFeatures, setDescription, setLocation, setParentFeature, setShortDescription, setSource, setType, setUserObject

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

QuantityFeature

public QuantityFeature(java.lang.String type,
               java.lang.String source)

Parameters:

type -

source -

Method Detail

addQuantity

public void addQuantity(java.lang.Number value)

Parameters:

value -

getQuantities

public java.util.List<java.lang.Number> getQuantities()

Returns:

the quantities

setQuantities

public void setQuantities(java.util.List<java.lang.Number> quantities)

Parameters:

quantities - the quantities to set