org.biojava.bio.structure.align.pairwise

Class AlignmentProgressListener

java.lang.Object

org.biojava.bio.structure.align.pairwise.AlignmentProgressListener

public class AlignmentProgressListener
extends java.lang.Object

A class to listen to progress of the structure alignmnent calcualtions

Author:

andreas

Constructor Summary

Constructors

Constructor and Description
AlignmentProgressListener()

Method Summary

Methods

Modifier and Type	Method and Description
void	calculatedFragmentPairs(java.util.List<FragmentPair> fragments)
void	jointFragments(JointFragments[] fragments)
void	startingAlignment(java.lang.String name1, Atom[] ca1, java.lang.String name2, Atom[] ca2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AlignmentProgressListener

public AlignmentProgressListener()

Method Detail

startingAlignment

public void startingAlignment(java.lang.String name1,
                     Atom[] ca1,
                     java.lang.String name2,
                     Atom[] ca2)

calculatedFragmentPairs

public void calculatedFragmentPairs(java.util.List<FragmentPair> fragments)

jointFragments

public void jointFragments(JointFragments[] fragments)