org.forester.phylogeny

Class PhylogenyBranch

java.lang.Object

org.forester.phylogeny.PhylogenyBranch

All Implemented Interfaces:

Edge

public class PhylogenyBranch
extends java.lang.Object
implements Edge

Constructor Summary

Constructors

Constructor and Description
PhylogenyBranch(PhylogenyNode first_node, PhylogenyNode second_node)
PhylogenyBranch(PhylogenyNode first_node, PhylogenyNode second_node, boolean direction_towards_first)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(java.lang.Object obj)
PhylogenyNode	getConnectedNode(PhylogenyNode node)
PhylogenyData	getData()
PhylogenyNode	getFirstNode()
PhylogenyNode	getSecondNode()
int	hashCode()
boolean	isDirected()
boolean	isDirectionTowards(PhylogenyNode node)
void	setDirectionTowards(PhylogenyNode node)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

PhylogenyBranch

public PhylogenyBranch(PhylogenyNode first_node,
               PhylogenyNode second_node)

PhylogenyBranch

public PhylogenyBranch(PhylogenyNode first_node,
               PhylogenyNode second_node,
               boolean direction_towards_first)

Method Detail

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

getConnectedNode

public PhylogenyNode getConnectedNode(PhylogenyNode node)
                               throws java.lang.IllegalArgumentException

Throws:

java.lang.IllegalArgumentException

getData

public PhylogenyData getData()

Specified by:

getData in interface Edge

getFirstNode

public PhylogenyNode getFirstNode()

Specified by:

getFirstNode in interface Edge

getSecondNode

public PhylogenyNode getSecondNode()

Specified by:

getSecondNode in interface Edge

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

isDirected

public boolean isDirected()

isDirectionTowards

public boolean isDirectionTowards(PhylogenyNode node)
                           throws java.lang.RuntimeException

Throws:

java.lang.RuntimeException

setDirectionTowards

public void setDirectionTowards(PhylogenyNode node)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object