org.biojava.nbio.structure.align.multiple

Interface MultipleSuperimposer

All Known Implementing Classes:

ReferenceSuperimposer

public interface MultipleSuperimposer

Method Summary

Methods

Modifier and Type	Method and Description
void	superimpose(MultipleAlignment alignment) Superimpose all structures from a MultipleAlignment.

Method Detail

superimpose

void superimpose(MultipleAlignment alignment)
                 throws StructureException

Superimpose all structures from a MultipleAlignment.

At a minimum, this should set the transformation matrices for either the MultipleAlignment (for rigid-body superpositions) or the individual BlockSets. Implementations may also set various scores

Parameters:

alignment - MultipleAlignment specifying the aligned residues (via the blocksets) and the atoms to align (via the ensemble).

Throws:

StructureException