Method Detail

• parse

  void parse(java.lang.Readable readable,
             ParseListener listener)
      throws java.io.IOException

  Parse the specified readable.

  Parameters:

  readable - readable, must not be null

  listener - low-level event based parser callback, must not be null

  Throws:

  java.io.IOException - if an I/O error occurs

• stream

  void stream(java.lang.Readable readable,
              StreamListener listener)
       throws java.io.IOException

  Stream the specified readable.

  Parameters:

  readable - readable, must not be null

  listener - event based reader callback, must not be null

  Throws:

  java.io.IOException - if an I/O error occurs

• read

  java.lang.Iterable<Fastq> read(java.io.File file)
                          throws java.io.IOException

  Read zero or more FASTQ formatted sequences from the specified file.

  Parameters:

  file - file to read from, must not be null

  Returns:

  zero or more FASTQ formatted sequences read from the specified file

  Throws:

  java.io.IOException - if an I/O error occurs

• read

  java.lang.Iterable<Fastq> read(java.net.URL url)
                          throws java.io.IOException

  Read zero or more FASTQ formatted sequences from the specified url.

  Parameters:

  url - URL to read from, must not be null

  Returns:

  zero or more FASTQ formatted sequences read from the specified url

  Throws:

  java.io.IOException - if an I/O error occurs

• read

  java.lang.Iterable<Fastq> read(java.io.InputStream inputStream)
                          throws java.io.IOException

  Read zero or more FASTQ formatted sequences from the specified input stream.

  Parameters:

  inputStream - input stream to read from, must not be null

  Returns:

  zero or more FASTQ formatted sequences read from the specified input stream

  Throws:

  java.io.IOException - if an I/O error occurs