CeSideChainMain

java.lang.Object
- org.biojava.nbio.structure.align.AbstractStructureAlignment
- - org.biojava.nbio.structure.align.ce.CeMain
  - - org.biojava.nbio.structure.align.ce.CeSideChainMain

All Implemented Interfaces:: StructureAlignment

public class CeSideChainMain
extends CeMain
implements StructureAlignment

Field Summary

Fields
Modifier and Type Field and Description

static java.lang.String algorithmName
- Fields inherited from class org.biojava.nbio.structure.align.ce.CeMain
  calculator, params
- Fields inherited from class org.biojava.nbio.structure.align.AbstractStructureAlignment
  newline

Fields
Modifier and Type	Field and Description
`static java.lang.String`	`algorithmName`

Constructor Summary

Constructors
Constructor and Description

CeSideChainMain()

Constructors
Constructor and Description
`CeSideChainMain()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`java.lang.String`	`getAlgorithmName()` Get the name of the Algorithm
`ConfigStrucAligParams`	`getParameters()` Return the paramers for this algorithm.
`java.lang.String`	`getVersion()` Get the Version information for this Algorithm.
`static void`	`main(java.lang.String[] args)`
`void`	`setParameters(ConfigStrucAligParams params)` Set the default parameters for this algorithm to use

Methods inherited from class org.biojava.nbio.structure.align.ce.CeMain
align, align, getCECalculator

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.nbio.structure.align.StructureAlignment
align, align

- Field Detail
  - algorithmName
```
public static final java.lang.String algorithmName
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - CeSideChainMain
```
public CeSideChainMain()
```
- Method Detail
  - main
```
public static void main(java.lang.String[] args)
                 throws ConfigurationException
```
    Throws:
    
    ConfigurationException
  - getAlgorithmName
```
public java.lang.String getAlgorithmName()
```
    Description copied from interface: StructureAlignment
    
    Get the name of the Algorithm
    
    Specified by:
    
    getAlgorithmName in interface StructureAlignment
    
    Overrides:
    
    getAlgorithmName in class CeMain
    
    Returns:
    
    the name of the algorithm
  - getParameters
```
public ConfigStrucAligParams getParameters()
```
    Description copied from interface: StructureAlignment
    
    Return the paramers for this algorithm.
    
    Specified by:
    
    getParameters in interface StructureAlignment
    
    Overrides:
    
    getParameters in class CeMain
    
    Returns:
    
    The returned object will be a Java bean.
  - setParameters
```
public void setParameters(ConfigStrucAligParams params)
```
    Description copied from interface: StructureAlignment
    
    Set the default parameters for this algorithm to use
    
    Specified by:
    
    setParameters in interface StructureAlignment
    
    Overrides:
    
    setParameters in class CeMain
  - getVersion
```
public java.lang.String getVersion()
```
    Description copied from interface: StructureAlignment
    
    Get the Version information for this Algorithm.
    
    Specified by:
    
    getVersion in interface StructureAlignment
    
    Overrides:
    
    getVersion in class CeMain
    
    Returns:
    
    the version of the algorithm

Class CeSideChainMain

Field Summary

Fields inherited from class org.biojava.nbio.structure.align.ce.CeMain

Fields inherited from class org.biojava.nbio.structure.align.AbstractStructureAlignment

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.structure.align.ce.CeMain

Methods inherited from class java.lang.Object

Methods inherited from interface org.biojava.nbio.structure.align.StructureAlignment

Field Detail

algorithmName

Constructor Detail

CeSideChainMain

Method Detail

main

getAlgorithmName

getParameters

setParameters

getVersion