Method Detail

• getDomainNames

  java.util.SortedSet<java.lang.String> getDomainNames(java.lang.String name)
                                                throws java.io.IOException,
                                                       StructureException

  Get a list of constituent domain identifiers

  Parameters:

  name - a structure identifier

  Returns:

  A list of domain names

  Throws:

  java.io.IOException - For IO errors getting the domains

  StructureException - For errors converting name to a valid identifier

• getRepresentativeDomains

  java.util.SortedSet<java.lang.String> getRepresentativeDomains()
                                                          throws java.io.IOException

  Get the full list of representative domains for the PDB. The exact definition representatives is implementation-specific, but should cover as many structures as possible.

  Returns:

  A full list of all representative domains recognized by this provider

  Throws:

  java.io.IOException - For IO errors getting the representatives