SequenceWriter

java.lang.Object
- org.forester.io.writers.SequenceWriter

public class SequenceWriter
extends java.lang.Object

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class SequenceWriter.SEQ_FORMAT

Nested Classes
Modifier and Type	Class and Description
`static class`	`SequenceWriter.SEQ_FORMAT`

Constructor Summary

Constructors
Constructor and Description

SequenceWriter()

Constructors
Constructor and Description
`SequenceWriter()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static java.lang.StringBuilder`	`toFasta(MolecularSequence seq, int width)`
`static void`	`toFasta(MolecularSequence seq, java.io.Writer w, int width)`
`static java.lang.StringBuilder`	`toFasta(java.lang.String name, java.lang.String mol_seq, int width)`
`static void`	`writeSeqs(java.util.List<MolecularSequence> seqs, java.io.File file, SequenceWriter.SEQ_FORMAT format, int width)`
`static void`	`writeSeqs(java.util.List<MolecularSequence> seqs, java.io.Writer writer, SequenceWriter.SEQ_FORMAT format, int width)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- SequenceWriter
```
public SequenceWriter()
```

Method Detail

toFasta

public static java.lang.StringBuilder toFasta(MolecularSequence seq,
                                              int width)

toFasta

public static java.lang.StringBuilder toFasta(java.lang.String name,
                                              java.lang.String mol_seq,
                                              int width)

toFasta

public static void toFasta(MolecularSequence seq,
                           java.io.Writer w,
                           int width)
                    throws java.io.IOException

Throws:: java.io.IOException

writeSeqs

public static void writeSeqs(java.util.List<MolecularSequence> seqs,
                             java.io.File file,
                             SequenceWriter.SEQ_FORMAT format,
                             int width)
                      throws java.io.IOException

Throws:: java.io.IOException

writeSeqs

public static void writeSeqs(java.util.List<MolecularSequence> seqs,
                             java.io.Writer writer,
                             SequenceWriter.SEQ_FORMAT format,
                             int width)
                      throws java.io.IOException

Throws:: java.io.IOException

Class SequenceWriter

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SequenceWriter

Method Detail

toFasta

toFasta

toFasta

writeSeqs

writeSeqs