Uri

java.lang.Object
- org.forester.phylogeny.data.Uri

All Implemented Interfaces:: PhylogenyData

public class Uri
extends java.lang.Object
implements PhylogenyData

Constructor Summary

Constructors
Constructor and Description
`Uri(java.lang.String uri_str, java.lang.String description, java.lang.String type)`
`Uri(java.net.URI uri)`
`Uri(java.net.URI uri, java.lang.String description, java.lang.String type)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`java.lang.StringBuffer`	`asSimpleText()`
`java.lang.StringBuffer`	`asText()`
`PhylogenyData`	`copy()` Creates a new PhylogenyData object with identical values as this PhylogenyData.
`java.lang.String`	`getDescription()`
`java.lang.String`	`getType()`
`java.net.URI`	`getValue()`
`boolean`	`isEqual(PhylogenyData data)` Compares this PhylogenyData to PhylogenyData data.
`java.lang.StringBuffer`	`toNHX()`
`void`	`toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation)` Writes a phyloXML representation of this phylogeny data.
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - Uri
```
public Uri(java.lang.String uri_str,
           java.lang.String description,
           java.lang.String type)
```
  - Uri
```
public Uri(java.net.URI uri)
```
  - Uri
```
public Uri(java.net.URI uri,
           java.lang.String description,
           java.lang.String type)
```
- Method Detail
  - asSimpleText
```
public java.lang.StringBuffer asSimpleText()
```
    Specified by:
    
    asSimpleText in interface PhylogenyData
  - asText
```
public java.lang.StringBuffer asText()
```
    Specified by:
    
    asText in interface PhylogenyData
  - copy
```
public PhylogenyData copy()
```
    Description copied from interface: PhylogenyData
    
    Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.
    
    Specified by:
    
    copy in interface PhylogenyData
    
    Returns:
    
    a ~deep~ copy of this PhylogenyData
  - getDescription
```
public java.lang.String getDescription()
```
  - getType
```
public java.lang.String getType()
```
  - getValue
```
public java.net.URI getValue()
```
  - isEqual
```
public boolean isEqual(PhylogenyData data)
```
    Description copied from interface: PhylogenyData
    
    Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.
    
    Specified by:
    
    isEqual in interface PhylogenyData
    
    Returns:
    
    in general, true if and only if all fiels are exactly identical, false otherwise
  - toNHX
```
public java.lang.StringBuffer toNHX()
```
    Specified by:
    
    toNHX in interface PhylogenyData
  - toPhyloXML
```
public void toPhyloXML(java.io.Writer writer,
                       int level,
                       java.lang.String indentation)
                throws java.io.IOException
```
    Description copied from interface: PhylogenyData
    
    Writes a phyloXML representation of this phylogeny data.
    
    Specified by:
    
    toPhyloXML in interface PhylogenyData
    
    Throws:
    
    java.io.IOException
  - toString
```
public java.lang.String toString()
```
    Overrides:
    
    toString in class java.lang.Object

Class Uri

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

Uri

Uri

Uri

Method Detail

asSimpleText

asText

copy

getDescription

getType

getValue

isEqual

toNHX

toPhyloXML

toString