AminoAcidCompositionTable

java.lang.Object
- org.biojava.nbio.aaproperties.xml.AminoAcidCompositionTable

public class AminoAcidCompositionTable
extends java.lang.Object

Constructor Summary

Constructors
Constructor Description

AminoAcidCompositionTable()

AminoAcidCompositionTable(java.util.List<AminoAcidComposition> aaList)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`computeMolecularWeight(ElementTable eTable)`	Computes and store the molecular weight of each amino acid by its symbol in aaSymbol2MolecularWeight.
`java.util.List<AminoAcidComposition>`	`getAminoacid()`
`ModifiedAminoAcidCompoundSet`	`getAminoAcidCompoundSet()`
`double`	`getMolecularWeight(java.lang.Character aaSymbol)`
`java.util.Set<java.lang.Character>`	`getSymbolSet()`
`void`	`setAminoacid(java.util.List<AminoAcidComposition> aminoacid)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - AminoAcidCompositionTable
```
public AminoAcidCompositionTable()
```
  - AminoAcidCompositionTable
```
public AminoAcidCompositionTable(java.util.List<AminoAcidComposition> aaList)
```
- Method Detail
  - getAminoAcidCompoundSet
```
public ModifiedAminoAcidCompoundSet getAminoAcidCompoundSet()
```
  - getAminoacid
```
public java.util.List<AminoAcidComposition> getAminoacid()
```
  - setAminoacid
```
public void setAminoacid(java.util.List<AminoAcidComposition> aminoacid)
```
  - getSymbolSet
```
public java.util.Set<java.lang.Character> getSymbolSet()
```
  - computeMolecularWeight
```
public void computeMolecularWeight(ElementTable eTable)
```
    Computes and store the molecular weight of each amino acid by its symbol in aaSymbol2MolecularWeight.
    
    Parameters:
    
    eTable - Stores the mass of elements and isotopes
  - getMolecularWeight
```
public double getMolecularWeight(java.lang.Character aaSymbol)
                          throws java.lang.NullPointerException
```
    Parameters:
    
    aaSymbol - Standard symbol of Amino Acid
    
    Returns:
    
    the molecular weight given its symbol
    
    Throws:
    
    java.lang.NullPointerException - thrown if AminoAcidCompositionTable.computeMolecularWeight(ElementTable) is not called before this method