java.lang.Object
- org.biojava.nbio.structure.quaternary.io.RemoteRawBioUnitDataProvider

All Implemented Interfaces:

RawBioUnitDataProvider
```
public class RemoteRawBioUnitDataProvider
extends java.lang.Object
implements RawBioUnitDataProvider
```
A BioUnitDataProvider that fetches the symmetry operations via remote calls to servers from RCSB PDB

Author:

Andreas Prlic

Field Summary

Fields
Modifier and Type	Field	Description
`static java.lang.String`	`DEFAULT_SERVERNAME`
`static java.lang.String`	`GET_ASSEMBLY`
`static java.lang.String`	`GET_ASSEMBLY_GENS`
`static java.lang.String`	`GET_STRUCT_OPER`
`static java.lang.String`	`NR_BIOL_APPEND`

Constructor Summary

Constructors
Constructor Description

RemoteRawBioUnitDataProvider()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`getNrBiolAssemblies()`	Returns the number of available biological assemblies.
`java.util.List<PdbxStructAssembly>`	`getPdbxStructAssemblies()`	Data access method for list describing all assemblies
`PdbxStructAssembly`	`getPdbxStructAssembly(int biolAssemblyNr)`	get the data for a particular pdbxStructAssembly.
`java.util.List<PdbxStructAssemblyGen>`	`getPdbxStructAssemblyGen(int biolAssemblyNr)`	get the data for a particular pdbxStructAssemblyGen.
`java.util.List<PdbxStructAssemblyGen>`	`getPdbxStructAssemblyGens()`	Data access method for list describing all assemblies
`java.util.List<PdbxStructOperList>`	`getPdbxStructOperList()`	Get all the possible operators
`int`	`getTimeout()`
`boolean`	`hasBiolAssembly()`	Does the PDB ID have biological assembly information?
`static void`	`main(java.lang.String[] args)`
`void`	`setPdbId(java.lang.String pdbId)`	Tell the provider for which PDB ID the quaternary structure should be returned.
`void`	`setTimeout(int timeout)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - DEFAULT_SERVERNAME
```
public static java.lang.String DEFAULT_SERVERNAME
```
  - NR_BIOL_APPEND
```
public static java.lang.String NR_BIOL_APPEND
```
  - GET_ASSEMBLY
```
public static java.lang.String GET_ASSEMBLY
```
  - GET_ASSEMBLY_GENS
```
public static java.lang.String GET_ASSEMBLY_GENS
```
  - GET_STRUCT_OPER
```
public static java.lang.String GET_STRUCT_OPER
```
- Constructor Detail
  - RemoteRawBioUnitDataProvider
```
public RemoteRawBioUnitDataProvider()
```
- Method Detail
  - main
```
public static void main(java.lang.String[] args)
```
  - getTimeout
```
public int getTimeout()
```
  - setTimeout
```
public void setTimeout(int timeout)
```
  - setPdbId
```
public void setPdbId(java.lang.String pdbId)
```
    Description copied from interface: RawBioUnitDataProvider
    
    Tell the provider for which PDB ID the quaternary structure should be returned.
    
    Specified by:
    
    setPdbId in interface RawBioUnitDataProvider
  - getNrBiolAssemblies
```
public int getNrBiolAssemblies()
```
    Description copied from interface: RawBioUnitDataProvider
    
    Returns the number of available biological assemblies.
    
    Specified by:
    
    getNrBiolAssemblies in interface RawBioUnitDataProvider
    
    Returns:
  - hasBiolAssembly
```
public boolean hasBiolAssembly()
```
    Description copied from interface: RawBioUnitDataProvider
    
    Does the PDB ID have biological assembly information?
    
    Specified by:
    
    hasBiolAssembly in interface RawBioUnitDataProvider
    
    Returns:
    
    boolean flag
  - getPdbxStructAssembly
```
public PdbxStructAssembly getPdbxStructAssembly(int biolAssemblyNr)
```
    Description copied from interface: RawBioUnitDataProvider
    
    get the data for a particular pdbxStructAssembly. We start counting at 0.
    
    Specified by:
    
    getPdbxStructAssembly in interface RawBioUnitDataProvider
    
    Returns:
  - getPdbxStructAssemblyGen
```
public java.util.List<PdbxStructAssemblyGen> getPdbxStructAssemblyGen(int biolAssemblyNr)
```
    Description copied from interface: RawBioUnitDataProvider
    
    get the data for a particular pdbxStructAssemblyGen. We start counting at 0.
    
    Specified by:
    
    getPdbxStructAssemblyGen in interface RawBioUnitDataProvider
    
    Returns:
  - getPdbxStructAssemblies
```
public java.util.List<PdbxStructAssembly> getPdbxStructAssemblies()
```
    Description copied from interface: RawBioUnitDataProvider
    
    Data access method for list describing all assemblies
    
    Specified by:
    
    getPdbxStructAssemblies in interface RawBioUnitDataProvider
    
    Returns:
  - getPdbxStructAssemblyGens
```
public java.util.List<PdbxStructAssemblyGen> getPdbxStructAssemblyGens()
```
    Description copied from interface: RawBioUnitDataProvider
    
    Data access method for list describing all assemblies
    
    Specified by:
    
    getPdbxStructAssemblyGens in interface RawBioUnitDataProvider
    
    Returns:
  - getPdbxStructOperList
```
public java.util.List<PdbxStructOperList> getPdbxStructOperList()
```
    Description copied from interface: RawBioUnitDataProvider
    
    Get all the possible operators
    
    Specified by:
    
    getPdbxStructOperList in interface RawBioUnitDataProvider
    
    Returns:

Class RemoteRawBioUnitDataProvider

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

DEFAULT_SERVERNAME

NR_BIOL_APPEND

GET_ASSEMBLY

GET_ASSEMBLY_GENS

GET_STRUCT_OPER

Constructor Detail

RemoteRawBioUnitDataProvider

Method Detail

main

getTimeout

setTimeout

setPdbId

getNrBiolAssemblies

hasBiolAssembly

getPdbxStructAssembly

getPdbxStructAssemblyGen

getPdbxStructAssemblies

getPdbxStructAssemblyGens

getPdbxStructOperList