java.lang.Object
- org.biojava.nbio.core.sequence.io.GenericGenbankHeaderParser<S,C>

All Implemented Interfaces:: SequenceHeaderParserInterface<S,C>

public class GenericGenbankHeaderParser<S extends AbstractSequence<C>,C extends Compound>
extends java.lang.Object
implements SequenceHeaderParserInterface<S,C>

Constructor Summary

Constructors
Constructor Description

GenericGenbankHeaderParser()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`parseHeader(java.lang.String header, S sequence)`	Parse the header and set the values in the sequence
`void`	`setAccession(java.lang.String accession)`	The last accession passed to this routine will always be the one used.
`void`	`setComment(java.lang.String comment)`
`void`	`setDescription(java.lang.String description)`
`void`	`setIdentifier(java.lang.String identifier)`
`void`	`setName(java.lang.String name)`
`void`	`setVersion(int version)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- GenericGenbankHeaderParser
```
public GenericGenbankHeaderParser()
```

Method Detail

parseHeader
```
public void parseHeader(java.lang.String header,
                        S sequence)
```
Parse the header and set the values in the sequence

Specified by:

parseHeader in interface SequenceHeaderParserInterface<S extends AbstractSequence<C>,C extends Compound>

Parameters:

header -

sequence -

setVersion

public void setVersion(int version)
                throws ParserException

Throws:: ParserException

setAccession
```
public void setAccession(java.lang.String accession)
                  throws ParserException
```
The last accession passed to this routine will always be the one used.

Throws:

ParserException

setDescription

public void setDescription(java.lang.String description)
                    throws ParserException

Throws:: ParserException

setIdentifier

public void setIdentifier(java.lang.String identifier)
                   throws ParserException

Throws:: ParserException

setName

public void setName(java.lang.String name)
             throws ParserException

Throws:: ParserException

setComment

public void setComment(java.lang.String comment)
                throws ParserException

Throws:: ParserException

Class GenericGenbankHeaderParser<S extends AbstractSequence<C>,​C extends Compound>

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

GenericGenbankHeaderParser

Method Detail

parseHeader

setVersion

setAccession

setDescription

setIdentifier

setName

setComment

Class GenericGenbankHeaderParser<S extends AbstractSequence<C>,C extends Compound>