Package org.biojava.nbio.protmod

Interface ProteinModification

  • All Known Implementing Classes:
    ProteinModificationImpl
    public interface ProteinModification
    This interface defines information about a specific protein modification.
    Since:
    3.0
    Author:
    Jianjiong Gao

    • Method Detail

      • getId

        java.lang.String getId()
        Returns:
        modification id.

      • getPdbccId

        java.lang.String getPdbccId()
        Returns:
        Protein Data Bank Chemical Component ID.

      • getPdbccName

        java.lang.String getPdbccName()
        Returns:
        Protein Data Bank Chemical Component name.

      • getResidId

        java.lang.String getResidId()
        Returns:
        RESID ID.

      • getResidName

        java.lang.String getResidName()
        Returns:
        RESID name.

      • getPsimodId

        java.lang.String getPsimodId()
        Returns:
        PSI-MOD ID.

      • getPsimodName

        java.lang.String getPsimodName()
        Returns:
        PSI-MOD name.

      • getSystematicName

        java.lang.String getSystematicName()
        Returns:
        Systematic name.

      • getDescription

        java.lang.String getDescription()
        Returns:
        Description.

      • getKeywords

        java.util.Set<java.lang.String> getKeywords()
        Returns:
        a set of keywords.

      • getFormula

        java.lang.String getFormula()
        Returns:
        formula of the modified residue.