Package org.biojava.nbio.structure.align.client

Class FarmJobParameters

  • public class FarmJobParameters
extends java.lang.Object

    • Field Detail

      • DEFAULT_SERVER_URL

        public static final java.lang.String DEFAULT_SERVER_URL

      • DEFAULT_PDB_PATH

        public static final java.lang.String DEFAULT_PDB_PATH
        See Also:
        Constant Field Values

    • Constructor Detail

      • FarmJobParameters

        public FarmJobParameters()

    • Method Detail

      • getPdbFilePath

        public java.lang.String getPdbFilePath()

      • setPdbFilePath

        public void setPdbFilePath​(java.lang.String pdbFilePath)

      • getCacheFilePath

        public java.lang.String getCacheFilePath()

      • setCacheFilePath

        public void setCacheFilePath​(java.lang.String cacheFilePath)

      • getNrAlignments

        public int getNrAlignments()

      • setNrAlignments

        public void setNrAlignments​(int nrAlignments)

      • getTime

        public int getTime()

      • setTime

        public void setTime​(int time)

      • getThreads

        public int getThreads()

      • setThreads

        public void setThreads​(int threads)

      • getServer

        public java.lang.String getServer()

      • setServer

        public void setServer​(java.lang.String server)

      • getUsername

        public java.lang.String getUsername()

      • setUsername

        public void setUsername​(java.lang.String username)

      • isRunBackground

        public boolean isRunBackground()
        Flag if a job that only runs one parallell job should be run in its own thread or in the main thread. For User interface related apps should be set to true. Default: false;
        Returns:
        flag

      • setRunBackground

        public void setRunBackground​(boolean runBackground)

      • getStepSize

        public int getStepSize()
        how many pairs should be requested for alignment from server?
        Returns:
        stepsize

      • setStepSize

        public void setStepSize​(int stepSize)

      • isVerbose

        public boolean isVerbose()
        Flag if the job should be run in verbose mode. Default: false
        Returns:
        flag if the job should be run in verbose mode

      • setVerbose

        public void setVerbose​(boolean verbose)

      • isUpdateRemediatedFiles

        public boolean isUpdateRemediatedFiles()

      • setUpdateRemediatedFiles

        public void setUpdateRemediatedFiles​(boolean updateRemediatedFiles)

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object