Package org.biojava.nbio.structure.scop

Class ScopDescription

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Cloneable
    public class ScopDescription
extends java.lang.Object
implements java.io.Serializable, java.lang.Cloneable
    Contains data from dir.des.scop.txt_1.75

    e.g 

     SunID  Cat     Class           Name    Description
 -----  ---     -----           ----    -----------
 26154  px      b.47.1.2        d1nrs.1 1nrs L:,H:
 125030 px      b.47.1.2        d1zgia1 1zgi A:1A-245
    Author:
    Andreas Prlic
    See Also:
    Serialized Form

    • Constructor Detail

      • ScopDescription

        public ScopDescription()

    • Method Detail

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object

      • getSunID

        public int getSunID()

      • setSunID

        public void setSunID​(int sunID)

      • setCategory

        public void setCategory​(ScopCategory category)

      • getClassificationId

        public java.lang.String getClassificationId()

      • setClassificationId

        public void setClassificationId​(java.lang.String classificationId)

      • getName

        public java.lang.String getName()

      • setName

        public void setName​(java.lang.String name)

      • getDescription

        public java.lang.String getDescription()

      • setDescription

        public void setDescription​(java.lang.String description)

      • getClassificationId

        public java.lang.String getClassificationId​(ScopCategory category)
        Return a portion of the classificationID corresponding to the specified category (class, fold, superfamily, family).

        Example: for SCOP family "b.5.1.1", getClassificationId(ScopCategory.Superfamily) => "b.5.1"

      • hashCode

        public int hashCode()
        Overrides:
        hashCode in class java.lang.Object
        Returns:
        See Also:
        Object.hashCode()

      • equals

        public boolean equals​(java.lang.Object obj)
        Compares the fields sunID, category, classificationId, and name for equality
        Overrides:
        equals in class java.lang.Object
        Parameters:
        obj -
        Returns:
        See Also:
        Object.equals(java.lang.Object)

      • clone

        protected java.lang.Object clone()
                          throws java.lang.CloneNotSupportedException
        Overrides:
        clone in class java.lang.Object
        Throws:
        java.lang.CloneNotSupportedException