Constant Field Values

Contents

org.biojava.*

  • org.biojava.nbio.aaproperties.profeat.convertor.Convertor 
    Modifier and Type Constant Field Value
    public static final char group1 49
    public static final char group2 50
    public static final char group3 51
    public static final char unknownGroup 48
  • org.biojava.nbio.alignment.io.StockholmFileParser 
    Modifier and Type Constant Field Value
    public static final int INFINITY -1
  • org.biojava.nbio.alignment.io.StockholmStructure 
    Modifier and Type Constant Field Value
    public static final java.lang.String PFAM "PFAM"
    public static final java.lang.String RFAM "RFAM"
  • org.biojava.nbio.alignment.io.StockholmStructure.DatabaseReference 
    Modifier and Type Constant Field Value
    public static final java.lang.String EXPERT "EXPERT"
    public static final java.lang.String HOMSTRAD "HOMSTRAD"
    public static final java.lang.String INTERPRO "INTERPRO"
    public static final java.lang.String LOAD "LOAD"
    public static final java.lang.String MIM "MIM"
    public static final java.lang.String PDB "PDB"
    public static final java.lang.String PFAMB "PFAMB"
    public static final java.lang.String PRINTS "PRINTS"
    public static final java.lang.String PROSITE "PROSITE"
    public static final java.lang.String PROSITE_PROFILE "PROSITE_PROFILE"
    public static final java.lang.String SCOP "SCOP"
    public static final java.lang.String SMART "SMART"
    public static final java.lang.String URL "URL"
  • org.biojava.nbio.core.exceptions.Messages 
    Modifier and Type Constant Field Value
    public static final java.lang.String ENDOFFILE "end of file"
    public static final java.lang.String SECTIONKEYNULL "section key is null"
  • org.biojava.nbio.core.util.Hashcoder 
    Modifier and Type Constant Field Value
    public static final int PRIME 79
    public static final int SEED 9
  • org.biojava.nbio.core.util.InputStreamProvider 
    Modifier and Type Constant Field Value
    public static final java.lang.String CACHE_PROPERTY "biojava.cache.files"
    public static final int GZIP_MAGIC 8075
  • org.biojava.nbio.core.util.SequenceTools 
    Modifier and Type Constant Field Value
    protected static final java.lang.String NUCLEOTIDE_LETTERS "GCTAUXN"
  • org.biojava.nbio.core.util.SoftHashMap<K,​V> 
    Modifier and Type Constant Field Value
    public static final int DEFAULT_LIMIT 1
  • org.biojava.nbio.genome.parsers.cytoband.CytobandParser 
    Modifier and Type Constant Field Value
    public static final java.lang.String DEFAULT_LOCATION "http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/cytoBand.txt.gz"
  • org.biojava.nbio.genome.parsers.genename.GeneChromosomePositionParser 
    Modifier and Type Constant Field Value
    public static final java.lang.String DEFAULT_MAPPING_URL "http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refFlat.txt.gz"
  • org.biojava.nbio.genome.parsers.genename.GeneNamesParser 
    Modifier and Type Constant Field Value
    public static final java.lang.String DEFAULT_GENENAMES_URL "https://www.genenames.org/cgi-bin/download?title=HGNC+output+data&hgnc_dbtag=on&col=gd_app_sym&col=gd_app_name&col=gd_status&col=gd_prev_sym&col=gd_prev_name&col=gd_aliases&col=gd_pub_chrom_map&col=gd_pub_acc_ids&col=md_mim_id&col=gd_pub_refseq_ids&col=md_ensembl_id&col=md_prot_id&col=gd_hgnc_id&status=Approved&status_opt=2&where=((gd_pub_chrom_map%20not%20like%20%27%patch%%27%20and%20gd_pub_chrom_map%20not%20like%20%27%ALT_REF%%27)%20or%20gd_pub_chrom_map%20IS%20NULL)%20and%20gd_locus_group%20%3d%20%27protein-coding%20gene%27&order_by=gd_app_sym_sort&format=text&limit=&submit=submit&.cgifields=&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag"
  • org.biojava.nbio.genome.util.ChromosomeMappingTools 
    Modifier and Type Constant Field Value
    public static final java.lang.String CDS "CDS"
    public static final java.lang.String CHROMOSOME "CHROMOSOME"
  • org.biojava.nbio.ontology.obo.OboFileHandler 
    Modifier and Type Constant Field Value
    public static final java.lang.String ALT_ID "alt_id"
    public static final java.lang.String BROAD_SYNONYM "broad_synonym"
    public static final java.lang.String COMMENT "comment"
    public static final java.lang.String DEF "def"
    public static final java.lang.String DISJOINT_FROM "disjoint_from"
    public static final java.lang.String EXACT_SYNONYM "exact_synonym"
    public static final java.lang.String ID_KEY "id"
    public static final java.lang.String INTERSECTION_OF "intersection_of"
    public static final java.lang.String IS_A "is_a"
    public static final java.lang.String IS_OBSOLETE "is_obsolete"
    public static final java.lang.String NAME "name"
    public static final java.lang.String NAMESPACE "namespace"
    public static final java.lang.String NARROW_SYNONYM "narrow_synonym"
    public static final java.lang.String ONTOLOGY "ontologys"
    public static final java.lang.String REL_SYNONYM "related_synonym"
    public static final java.lang.String RELATIONSHIP "relationship"
    public static final java.lang.String REPLACED_BY "replaced_by"
    public static final java.lang.String SUBSET "subset"
    public static final java.lang.String SYNONYM "synonym"
    public static final java.lang.String TERM "Term"
    public static final java.lang.String TYPEDEF "Typedef"
    public static final java.lang.String XREF_ANALOG "xref_analog"
  • org.biojava.nbio.phosphosite.Dataset 
    Modifier and Type Constant Field Value
    public static final java.lang.String ACETYLATION "https://www.phosphosite.org/downloads/Acetylation_site_dataset.gz"
    public static final java.lang.String DISEASE_ASSOC "https://www.phosphosite.org/downloads/Disease-associated_sites.gz"
    public static final java.lang.String METHYLATION "https://www.phosphosite.org/downloads/Methylation_site_dataset.gz"
    public static final java.lang.String PHOSPHORYLATION "https://www.phosphosite.org/downloads/Phosphorylation_site_dataset.gz"
    public static final java.lang.String REGULATORY "https://www.phosphosite.org/downloads/Regulatory_sites.gz"
    public static final java.lang.String SUMOYLATION "https://www.phosphosite.org/downloads/Sumoylation_site_dataset.gz"
    public static final java.lang.String UBIQUITINATION "https://www.phosphosite.org/downloads/Ubiquitination_site_dataset.gz"
  • org.biojava.nbio.structure.align.ce.CECalculator 
    Modifier and Type Constant Field Value
    protected static final boolean isPrint false
    protected static final int nIter 1
    protected static final double zThr -0.1
  • org.biojava.nbio.structure.align.ce.CeCalculatorEnhanced 
    Modifier and Type Constant Field Value
    public static final boolean GLOBAL_ALIGN1 false
    public static final boolean GLOBAL_ALIGN2 false
    protected static final boolean isPrint true
    protected static final int nIter 1
    protected static final double zThr -0.1
  • org.biojava.nbio.structure.align.ce.CeCPMain 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jCE Circular Permutation"
    public static final java.lang.String version "1.5"
  • org.biojava.nbio.structure.align.ce.CECPParameters 
    Modifier and Type Constant Field Value
    public static final int DEFAULT_MIN_CP_LENGTH 5
  • org.biojava.nbio.structure.align.ce.CeMain 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jCE"
    public static final java.lang.String version "1.2"
  • org.biojava.nbio.structure.align.ce.CeParameters 
    Modifier and Type Constant Field Value
    protected static final double DEFAULT_GAP_EXTENSION 0.5
    protected static final double DEFAULT_GAP_OPEN 5.0
    protected static final double DEFAULT_oRmsdThr 2.0
    protected static final java.lang.String DEFAULT_SUBSTITUTION_MATRIX "PRLA000101"
    protected static final double DISTANCE_INCREMENT 0.5
  • org.biojava.nbio.structure.align.ce.CeSideChainMain 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jCE-sidechain"
  • org.biojava.nbio.structure.align.ce.OptimalCECPMain 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jCE Optimal Circular Permutation"
    public static final java.lang.String version "1.0"
  • org.biojava.nbio.structure.align.fatcat.FatCat 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jFatCat"
    public static final java.lang.String VERSION "1.1"
  • org.biojava.nbio.structure.align.fatcat.FatCatFlexible 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jFatCat_flexible"
  • org.biojava.nbio.structure.align.fatcat.FatCatRigid 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jFatCat_rigid"
  • org.biojava.nbio.structure.align.fatcat.calc.AFPCalculator 
    Modifier and Type Constant Field Value
    public static final boolean debug false
  • org.biojava.nbio.structure.align.fatcat.calc.AFPChainer 
    Modifier and Type Constant Field Value
    public static final boolean debug false
  • org.biojava.nbio.structure.align.fatcat.calc.AFPOptimizer 
    Modifier and Type Constant Field Value
    public static final boolean debug false
  • org.biojava.nbio.structure.align.fatcat.calc.AFPPostProcessor 
    Modifier and Type Constant Field Value
    public static final boolean debug false
  • org.biojava.nbio.structure.align.fatcat.calc.FatCatAligner 
    Modifier and Type Constant Field Value
    public static final boolean debug false
    public static final boolean printTimeStamps false
  • org.biojava.nbio.structure.align.fatcat.calc.FatCatParameters 
    Modifier and Type Constant Field Value
    public static final int DEFAULT_FRAGLEN 8
  • org.biojava.nbio.structure.align.gui.ChooseDirAction 
    Modifier and Type Constant Field Value
    public static final long serialVersionUID 0L
  • org.biojava.nbio.structure.align.gui.MemoryMonitor 
    Modifier and Type Constant Field Value
    public static final long serialVersionUID 56289234782130L
  • org.biojava.nbio.structure.align.gui.MemoryMonitor.Surface 
    Modifier and Type Constant Field Value
    public static final long serialVersionUID 2387409854370432908L
  • org.biojava.nbio.structure.align.gui.MenuCreator 
    Modifier and Type Constant Field Value
    public static final java.lang.String ALIGNMENT_PANEL "Alignment Panel"
    public static final java.lang.String DIST_MATRICES "Show Distance Matrices"
    public static final java.lang.String DOT_PLOT "Show Dot Plot"
    public static final java.lang.String EQR_COLOR "Color By EQR"
    public static final java.lang.String FASTA_FORMAT "View FASTA Alignment"
    public static final java.lang.String FATCAT_BLOCK "Color By Alignment Block"
    public static final java.lang.String FATCAT_TEXT "View as FATCAT result"
    public static final java.lang.String LOAD_ALIGNMENT_XML "Load Alignment XML"
    public static final java.lang.String LOAD_DB_RESULTS "Load DB search results"
    public static final java.lang.String MULTIPLE_ALIGN "New Multiple Alignment"
    public static final java.lang.String PAIRS_ONLY "View Aligned Pairs"
    public static final java.lang.String PAIRWISE_ALIGN "New Pairwise Alignment"
    public static final java.lang.String PHYLOGENETIC_TREE "Phylogenetic Tree"
    public static final java.lang.String PRINT "Print"
    public static final java.lang.String SAVE_ALIGNMENT_XML "Save Alignment XML"
    public static final java.lang.String SELECT_EQR "Select Equivalent Positions"
    public static final java.lang.String SIMILARITY_COLOR "Color By Similarity"
    public static final java.lang.String TEXT_ONLY "View Text Only"
  • org.biojava.nbio.structure.align.gui.SystemInfo 
    Modifier and Type Constant Field Value
    public static final java.lang.String defaultProperties "browser file.separator java.class.version java.vendor java.vendor.url java.version line.separator os.arch os.name os.version path.separator "
    public static final java.lang.String hexPropertyNames " file.separator line.separator path.separator "
    public static final java.lang.String urlPropertyNames " browser.vendor.url java.class.path java.home user.dir user.home user.name "
  • org.biojava.nbio.structure.align.model.AFPChain 
    Modifier and Type Constant Field Value
    public static final java.lang.String UNKNOWN_ALGORITHM "unknown"
  • org.biojava.nbio.structure.align.multiple.mc.MultipleMcMain 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jMultipleMC"
    public static final java.lang.String version "1.1"
  • org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentScorer 
    Modifier and Type Constant Field Value
    public static final java.lang.String AVGTM_SCORE "AvgTM-score"
    public static final java.lang.String CE_SCORE "CE-score"
    public static final java.lang.String MC_SCORE "MC-score"
    public static final java.lang.String PROBABILITY "Probability"
    public static final java.lang.String REF_RMSD "Ref-RMSD"
    public static final java.lang.String REFTM_SCORE "RefTM-score"
    public static final java.lang.String RMSD "RMSD"
  • org.biojava.nbio.structure.align.seq.SmithWaterman3Daligner 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "Smith-Waterman superposition"
  • org.biojava.nbio.structure.domain.PDBDomainProvider 
    Modifier and Type Constant Field Value
    public static final java.lang.String DEFAULT_PDB_API_URL "http://www.rcsb.org/pdb/rest/"
    public static final java.lang.String DEFAULT_PDB_HOST "http://www.rcsb.org"
  • org.biojava.nbio.structure.domain.RemotePDPProvider 
    Modifier and Type Constant Field Value
    public static final java.lang.String DEFAULT_SERVER "http://source.rcsb.org/jfatcatserver/domains/"
  • org.biojava.nbio.structure.domain.pdp.PDPParameters 
    Modifier and Type Constant Field Value
    public static final float CUT_OFF_VALUE 0.5f
    public static final float CUT_OFF_VALUE1 0.28999999165534973f
    public static final float CUT_OFF_VALUE1M 0.20999999344348907f
    public static final float CUT_OFF_VALUE1S 0.1899999976158142f
    public static final float CUT_OFF_VALUE2 0.4399999976158142f
    public static final float DBL 0.05000000074505806f
    public static final int ENDS 12
    public static final int ENDSEND 9
    public static final int MAX_CUTS 80
    public static final int MAXCONT 900
    public static final int MAXDOM 30
    public static final int MAXLEN 3200
    public static final int MAXSIZE 350
    public static final int MIN_DOMAIN_LENGTH 35
    public static final float RG 0.0f
    public static final float RG1 1.0f
    public static final float TD 25.0f
    public static final float TD1 40.0f
  • org.biojava.nbio.structure.gui.BiojavaJmol 
    Modifier and Type Constant Field Value
    public static final java.lang.String adapter "org.jmol.api.JmolAdapter"
    public static final java.lang.String smartAdapter "org.jmol.adapter.smarter.SmarterJmolAdapter"
    public static final java.lang.String viewer "org.jmol.api.JmolSimpleViewer"
  • org.biojava.nbio.structure.gui.JmolViewerImpl 
    Modifier and Type Constant Field Value
    public static final java.lang.String adapter "org.jmol.api.JmolAdapter"
    public static final java.lang.String smartAdapter "org.jmol.adapter.smarter.SmarterJmolAdapter"
    public static final java.lang.String viewer "org.jmol.api.JmolSimpleViewer"
  • org.biojava.nbio.structure.gui.ScaleableMatrixPanel 
    Modifier and Type Constant Field Value
    protected static final int SLIDER_STEPS 8
  • org.biojava.nbio.structure.gui.SequenceDisplay 
    Modifier and Type Constant Field Value
    public static final int MAX_SCALE 10
  • org.biojava.nbio.structure.rcsb.PdbIdLists 
    Modifier and Type Constant Field Value
    public static final java.lang.String SERVICELOCATION "http://www.rcsb.org/pdb/rest/search"
  • org.biojava.nbio.structure.rcsb.RCSBUpdates 
    Modifier and Type Constant Field Value
    public static final java.lang.String baseURL "http://ftp.rcsb.org/pub/pdb/data/status/latest/"
  • org.biojava.nbio.structure.symmetry.internal.CeSymm 
    Modifier and Type Constant Field Value
    public static final java.lang.String algorithmName "jCE-symm"
    public static final java.lang.String version "2.2"
  • org.biojava.nbio.structure.symmetry.internal.CESymmParameters 
    Modifier and Type Constant Field Value
    public static final double DEFAULT_SYMMETRY_THRESHOLD 0.4
  • org.biojava.nbio.ws.hmmer.RemoteHmmerScan 
    Modifier and Type Constant Field Value
    public static final java.lang.String HMMER_SERVICE "https://www.ebi.ac.uk/Tools/hmmer/search/hmmscan"

org.forester.*

  • org.forester.applications.aaa 
    Modifier and Type Constant Field Value
    public static final int MIN_LENGTH 85
  • org.forester.applications.get_shared_chars 
    Modifier and Type Constant Field Value
    public static final boolean DEBUG true
  • org.forester.archaeopteryx.webservices.PhylogeniesWebserviceClient 
    Modifier and Type Constant Field Value
    public static final java.lang.String QUERY_PLACEHOLDER "__query__"
  • org.forester.archaeopteryx.webservices.WebserviceUtil 
    Modifier and Type Constant Field Value
    public static final java.lang.String PFAM_INST "pfam"
    public static final java.lang.String PFAM_NAME "Pfam"
    public static final java.lang.String PFAM_SERVER "http://pfam.xfam.org"
    public static final java.lang.String TOL_NAME "Tree of Life (ToL)"
    public static final java.lang.String TOL_URL_BASE "http://tolweb.org/onlinecontributors/app?service=external&page=xml/TreeStructureService&node_id="
    public static final java.lang.String TOL_WEBSERVER "http://tolweb.org/onlinecontributors/app?service=external&page=xml/TreeStructureService&node_id=__query__"
    public static final java.lang.String TREE_BASE_DESC "This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment."
    public static final java.lang.String TREE_BASE_INST "treebase"
    public static final java.lang.String TREE_BASE_NAME "TreeBASE"
    public static final java.lang.String TREE_FAM_INST "tree_fam"
    public static final java.lang.String TREE_FAM_NAME "TreeFam"
    public static final java.lang.String TREE_FAM_URL_BASE "http://www.treefam.org/family/TF"
    public static final java.lang.String TREEBASE_PHYLOWS_STUDY_URL_BASE "http://purl.org/phylo/treebase/phylows/study/TB2:S"
    public static final java.lang.String TREEBASE_PHYLOWS_TREE_URL_BASE "http://purl.org/phylo/treebase/phylows/tree/TB2:Tr"
  • org.forester.io.parsers.nexus.NexusConstants 
    Modifier and Type Constant Field Value
    public static final java.lang.String BEGIN_CHARACTERS "Begin Characters;"
    public static final java.lang.String BEGIN_DATA "Begin Data;"
    public static final java.lang.String BEGIN_TAXA "Begin Taxa;"
    public static final java.lang.String BEGIN_TREES "Begin Trees;"
    public static final java.lang.String CHARSTATELABELS "CharStateLabels"
    public static final java.lang.String DATATYPE "DataType"
    public static final java.lang.String DIMENSIONS "Dimensions"
    public static final java.lang.String END "End;"
    public static final java.lang.String FORMAT "Format"
    public static final java.lang.String MATRIX "Matrix"
    public static final java.lang.String NCHAR "NChar"
    public static final java.lang.String NEXUS "#NEXUS"
    public static final java.lang.String NTAX "NTax"
    public static final java.lang.String STANDARD "Standard"
    public static final java.lang.String SYMBOLS "Symbols"
    public static final java.lang.String TAXLABELS "TaxLabels"
    public static final java.lang.String TRANSLATE "Translate"
    public static final java.lang.String TREE "Tree"
    public static final java.lang.String UTREE "UTREE"
  • org.forester.io.parsers.util.ParserUtils 
    Modifier and Type Constant Field Value
    public static final java.lang.String TAX_CODE "(?:[A-Z9][A-Z]{2}[A-Z0-9]{2})|RAT|PIG|PEA"
    public static final java.lang.String TAX_CODE_LO "(?:[A-Z]{5})|RAT|PIG|PEA"
  • org.forester.rio.RIO 
    Modifier and Type Constant Field Value
    public static final int DEFAULT_RANGE -1
  • org.forester.sequence.MolecularSequence 
    Modifier and Type Constant Field Value
    public static final java.lang.String AA_REGEXP "[^ARNDBCQEZGHILKMFPSTWYVXUO\\-\\*]"
    public static final java.lang.String DNA_REGEXP "[^ACGTRYMKWSN\\-\\*]"
    public static final char GAP 45
    public static final java.lang.String RNA_REGEXP "[^ACGURYMKWSN\\-\\*]"
    public static final char TERMINATE 42
    public static final char UNSPECIFIED_AA 88
    public static final char UNSPECIFIED_NUC 78
  • org.forester.util.DescriptiveStatistics 
    Modifier and Type Constant Field Value
    public static final java.lang.String PLUS_MINUS "\u00b1"
  • org.forester.util.ForesterConstants 
    Modifier and Type Constant Field Value
    public static final java.lang.String FORESTER_DATE "150513"
    public static final java.lang.String FORESTER_VERSION "1.039"
    public static final java.lang.String LOCAL_PHYLOXML_XSD_RESOURCE "resources/phyloxml.xsd"
    public static final java.lang.String PHYLO_XML_LOCATION "http://www.phyloxml.org"
    public static final java.lang.String PHYLO_XML_REFERENCE "Han MV and Zmasek CM (2009): \"phyloXML: XML for evolutionary biology and comparative genomics\", BMC Bioinformatics 10:356"
    public static final java.lang.String PHYLO_XML_SUFFIX ".xml"
    public static final java.lang.String PHYLO_XML_VERSION "1.10"
    public static final java.lang.String PHYLO_XML_XSD "phyloxml.xsd"
    public static final boolean RELEASE false
    public static final java.lang.String UTF8 "UTF-8"
    public static final java.lang.String XML_SCHEMA_INSTANCE "http://www.w3.org/2001/XMLSchema-instance"
  • org.forester.util.ForesterUtil 
    Modifier and Type Constant Field Value
    public static final java.lang.String NCBI_GI "http://www.ncbi.nlm.nih.gov/protein/gi:"
    public static final java.lang.String NCBI_NUCCORE "http://www.ncbi.nlm.nih.gov/nuccore/"
    public static final java.lang.String NCBI_PROTEIN "http://www.ncbi.nlm.nih.gov/protein/"
    public static final java.lang.String PDB "http://www.pdb.org/pdb/explore/explore.do?pdbId="
    public static final java.lang.String UNIPROT_KB "http://www.uniprot.org/uniprot/"
    public static final double ZERO_DIFF 1.0E-9
  • org.forester.util.SequenceAccessionTools 
    Modifier and Type Constant Field Value
    public static final java.lang.String UNIPROT_KB_BASE_PATTERN_STR "((?:[OPQ][0-9][A-Z0-9]{3}[0-9])|(?:[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}))"
  • org.forester.ws.seqdb.SequenceDbWsTools 
    Modifier and Type Constant Field Value
    public static final java.lang.String BASE_UNIPROT_URL "http://www.uniprot.org/"
    public static final int DEFAULT_LINES_TO_RETURN 4000
    public static final java.lang.String EMBL_DBS_REFSEQ_N "refseqn"
    public static final java.lang.String EMBL_DBS_REFSEQ_P "refseqp"
    public static final java.lang.String EMBL_EMBL "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=EMBL&style=raw&id="
    public static final java.lang.String EMBL_GENBANK "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=GENBANK&style=raw&id="
    public static final java.lang.String EMBL_REFSEQ "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=REFSEQ&style=raw&id="
  • org.forester.ws.seqdb.UniProtTaxonomy 
    Modifier and Type Constant Field Value
    public static final java.lang.String ARCHAEA "Archaea"
    public static final java.lang.String BACTERIA "Bacteria"
    public static final java.lang.String CELLULAR_ORGANISMS "cellular organisms"
    public static final java.lang.String EUKARYOTA "Eukaryota"
    public static final java.lang.String VIRUSES "Viruses"
    public static final java.lang.String X "x"