SecStrucInfo (biojava 5.4.0 API)

java.lang.Object
- org.biojava.nbio.structure.secstruc.SecStrucInfo

All Implemented Interfaces:

java.io.Serializable

Direct Known Subclasses:

SecStrucState
```
public class SecStrucInfo
extends java.lang.Object
implements java.io.Serializable
```
Container for the secondary structure information of a single residue. This class is designed to be stored inside an Amino Acid object. It can also contain a back-reference to its parent AA.

Since:

4.1.1

Author:

Aleix Lafita

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`protected java.lang.String`	`assignment`
`static java.lang.String`	`BIOJAVA_ASSIGNMENT`	Secondary strucuture calculated and assigned by DSSP of BioJava
`static java.lang.String`	`DSSP_ASSIGNMENT`	Secondary strucuture parsed from a DSSP output file
`protected Group`	`parent`
`static java.lang.String`	`PDB_AUTHOR_ASSIGNMENT`	Secondary strucuture assigned by the PDB author
`protected SecStrucType`	`type`

Constructor Summary

Constructors
Constructor Description

SecStrucInfo(Group g, java.lang.String ass, SecStrucType t)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(java.lang.Object o)`
`java.lang.String`	`getAssignment()`
`Group`	`getGroup()`
`SecStrucType`	`getType()`
`int`	`hashCode()`
`void`	`setType(SecStrucType t)`
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail
- PDB_AUTHOR_ASSIGNMENT
```
public static final java.lang.String PDB_AUTHOR_ASSIGNMENT
```
  Secondary strucuture assigned by the PDB author
  
  See Also:
  
  Constant Field Values
- DSSP_ASSIGNMENT
```
public static final java.lang.String DSSP_ASSIGNMENT
```
  Secondary strucuture parsed from a DSSP output file
  
  See Also:
  
  Constant Field Values
- BIOJAVA_ASSIGNMENT
```
public static final java.lang.String BIOJAVA_ASSIGNMENT
```
  Secondary strucuture calculated and assigned by DSSP of BioJava
  
  See Also:
  
  Constant Field Values
- type
```
protected SecStrucType type
```
- assignment
```
protected java.lang.String assignment
```
- parent
```
protected Group parent
```

Constructor Detail

SecStrucInfo

public SecStrucInfo(Group g,
                    java.lang.String ass,
                    SecStrucType t)

Method Detail

getType
```
public SecStrucType getType()
```

setType

public void setType(SecStrucType t)

getAssignment

public java.lang.String getAssignment()

getGroup
```
public Group getGroup()
```

toString
```
public java.lang.String toString()
```
Overrides:

toString in class java.lang.Object

hashCode
```
public int hashCode()
```
Overrides:

hashCode in class java.lang.Object

equals

public boolean equals(java.lang.Object o)

Overrides:: equals in class java.lang.Object