Uses of Class
org.forester.archaeopteryx.MainFrameApplication

Packages that use MainFrameApplication

Package	Description
org.forester.analysis
org.forester.archaeopteryx
org.forester.archaeopteryx.tools

Uses of MainFrameApplication in org.forester.analysis

Constructors in org.forester.analysis with parameters of type MainFrameApplication

Constructor	Description
TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)
TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name)

Uses of MainFrameApplication in org.forester.archaeopteryx

Methods in org.forester.archaeopteryx that return MainFrameApplication

Modifier and Type	Method	Description
static MainFrameApplication	MainFrameApplication.createInstance(Phylogeny[] phys, Configuration config)

Uses of MainFrameApplication in org.forester.archaeopteryx.tools

Constructors in org.forester.archaeopteryx.tools with parameters of type MainFrameApplication

Constructor	Description
PhylogeneticInferrer(java.util.List<MolecularSequence> seqs, PhylogeneticInferenceOptions options, MainFrameApplication mf)
PhylogeneticInferrer(Msa msa, PhylogeneticInferenceOptions options, MainFrameApplication mf)
PhyloInferenceDialog(MainFrameApplication frame, PhylogeneticInferenceOptions options, boolean from_unaligned_seqs)
SequenceDataRetriver(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)