Uses of Class
org.forester.archaeopteryx.TreePanel

Packages that use TreePanel

Package	Description
org.forester.analysis
org.forester.archaeopteryx
org.forester.archaeopteryx.phylogeny.data
org.forester.archaeopteryx.tools

Uses of TreePanel in org.forester.analysis

Constructors in org.forester.analysis with parameters of type TreePanel

Constructor	Description
TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)
TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name)

Uses of TreePanel in org.forester.archaeopteryx

Methods in org.forester.archaeopteryx that return TreePanel

Modifier and Type	Method	Description
TreePanel	MainPanel.getCurrentTreePanel()

Methods in org.forester.archaeopteryx with parameters of type TreePanel

Modifier and Type	Method	Description
static java.lang.String	TreePanelUtil.createUriForSeqWeb(PhylogenyNode node, Configuration conf, TreePanel tp)
static java.util.List<java.lang.String>	TreePanelUtil.createUrisForPdbWeb(PhylogenyNode node, java.util.List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel)
static void	AptxUtil.writePhylogenyToGraphicsFileNonInteractive(java.io.File outfile, int width, int height, TreePanel tree_panel, org.forester.archaeopteryx.ControlPanel ac, AptxUtil.GraphicsExportType type, Options options)

Uses of TreePanel in org.forester.archaeopteryx.phylogeny.data

Methods in org.forester.archaeopteryx.phylogeny.data with parameters of type TreePanel

Modifier and Type	Method	Description
void	RenderableDomainArchitecture.render(float x1, float y1, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)
void	RenderableMsaSequence.render(float x1, float y1, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)
void	RenderablePhylogenyData.render(float x, float y, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)	This can be used to render phylogeny data as graphics (for example, display of the domain structure).
void	RenderableVector.render(float x1, float y1, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)

Uses of TreePanel in org.forester.archaeopteryx.tools

Methods in org.forester.archaeopteryx.tools with parameters of type TreePanel

Modifier and Type	Method	Description
static void	Blast.openNcbiBlastWeb(java.lang.String query, boolean is_nucleic_acids, javax.swing.JApplet applet, TreePanel p)

Constructors in org.forester.archaeopteryx.tools with parameters of type TreePanel

Constructor	Description
AncestralTaxonomyInferrer(MainFrame mf, TreePanel treepanel, Phylogeny phy)
ImageLoader(TreePanel tp)
SequenceDataRetriver(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)