Uses of Class
org.forester.archaeopteryx.tools.PhylogeneticInferenceOptions

Packages that use PhylogeneticInferenceOptions

Package	Description
org.forester.archaeopteryx.tools

Uses of PhylogeneticInferenceOptions in org.forester.archaeopteryx.tools

Methods in org.forester.archaeopteryx.tools that return PhylogeneticInferenceOptions

Modifier and Type	Method	Description
PhylogeneticInferenceOptions	PhylogeneticInferenceOptions.copy()
static PhylogeneticInferenceOptions	PhylogeneticInferenceOptions.createInstance(Configuration configuration)
PhylogeneticInferenceOptions	PhyloInferenceDialog.getPhylogeneticInferenceOptions()

Constructors in org.forester.archaeopteryx.tools with parameters of type PhylogeneticInferenceOptions

Constructor	Description
PhylogeneticInferrer(java.util.List<MolecularSequence> seqs, PhylogeneticInferenceOptions options, MainFrameApplication mf)
PhylogeneticInferrer(Msa msa, PhylogeneticInferenceOptions options, MainFrameApplication mf)
PhyloInferenceDialog(MainFrameApplication frame, PhylogeneticInferenceOptions options, boolean from_unaligned_seqs)