Uses of Class
org.forester.ws.seqdb.UniProtTaxonomy
Packages that use UniProtTaxonomy
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Uses of UniProtTaxonomy in org.forester.analysis
Methods in org.forester.analysis that return UniProtTaxonomyModifier and TypeMethodDescriptionstatic final UniProtTaxonomyTaxonomyDataManager.obtainUniProtTaxonomy(String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) static final UniProtTaxonomyTaxonomyDataManager.obtainUniProtTaxonomy(Taxonomy tax, Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) -
Uses of UniProtTaxonomy in org.forester.ws.seqdb
Methods in org.forester.ws.seqdb that return UniProtTaxonomyModifier and TypeMethodDescriptionUniProtTaxonomy.copy()Creates deep copy for all fields, except lineage.static final UniProtTaxonomyUniProtTaxonomy.createSpecialFromScientificName(String sn) Methods in org.forester.ws.seqdb that return types with arguments of type UniProtTaxonomyModifier and TypeMethodDescriptionstatic List<UniProtTaxonomy>SequenceDbWsTools.getTaxonomiesFromCommonNameStrict(String cn, int max_taxonomies_return) static List<UniProtTaxonomy>SequenceDbWsTools.getTaxonomiesFromId(String id, int max_taxonomies_return) static List<UniProtTaxonomy>SequenceDbWsTools.getTaxonomiesFromScientificNameStrict(String sn, int max_taxonomies_return) Does not return "sub-types".static List<UniProtTaxonomy>SequenceDbWsTools.getTaxonomiesFromTaxonomyCode(String code, int max_taxonomies_return)