Metadata-Version: 2.1
Name: dcmstack
Version: 0.9.0
Summary: Stack DICOM images into volumes and convert to Nifti
Home-page: https://github.com/moloney/dcmstack
Author: Brendan Moloney
Author-email: moloney@ohsu.edu
Maintainer: Brendan Moloney
Maintainer-email: moloney@ohsu.edu
Platform: OS Independent
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering
Provides: dcmstack
Requires-Python: >=2.7
Description-Content-Type: text/x-rst
License-File: COPYING
Requires-Dist: pydicom>=0.9.7
Requires-Dist: nibabel>=2.5.1
Requires-Dist: pylibjpeg-libjpeg; python_version >= "3.7"
Provides-Extra: doc
Requires-Dist: numpydoc; extra == "doc"
Requires-Dist: sphinx; extra == "doc"
Provides-Extra: test
Requires-Dist: pytest-cov; extra == "test"
Requires-Dist: pytest; python_version > "2.7" and extra == "test"
Requires-Dist: pytest<=4.6; python_version == "2.7" and extra == "test"

========
dcmstack
========

This package provides DICOM to Nifti conversion with the added ability 
to extract and summarize meta data from the source DICOMs. The meta data
can be injected it into a Nifti header extension or written out as a JSON 
formatted text file.


Installing
----------

You can the latest release from PyPI by doing:

.. code-block:: console

  $ pip install dcmstack


Documentation
-------------

Documentation can be read online: https://dcmstack.readthedocs.org/

You can build the HTML documentation under build/sphinx/html with:

If you have the *sphinx* and *numpydoc* packages and a *make* command you 
can build the documentation by running the *make* command in the *doc/* 
directory. For example, to create the HTML documentation you would do:

.. code-block:: console
  
  $ python setup.py build_sphinx
  $ make html

And then view doc/_build/html/index.html with a web browser.


Running Tests
-------------

You can install dcmstack along with any test dependencies by installing the ``test`` 
extra. Then you can run the ``pytest`` command to run the test-suite:

.. code-block:: console
  
  $ pip install dcmstack[test]
  $ pytest

